IL_1VY7_242

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

1VY7|1|DA|U|504, 1VY7|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY7_242 not in the Motif Atlas

Geometric match to IL_7RQB_014

Geometric discrepancy: 0.0684

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

1VY7|1|DA|G|481
1VY7|1|DA|A|482
1VY7|1|DA|A|483
1VY7|1|DA|C|484
*
1VY7|1|DA|G|496
1VY7|1|DA|A|497
1VY7|1|DA|G|498
1VY7|1|DA|U|499
1VY7|1|DA|G|500
1VY7|1|DA|A|501
1VY7|1|DA|A|502
1VY7|1|DA|A|503
1VY7|1|DA|U|504
1VY7|1|DA|A|505
1VY7|1|DA|G|506
1VY7|1|DA|A|507
1VY7|1|DA|G|508
1VY7|1|DA|C|509

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DW

50S ribosomal protein L22

Chain DY

50S ribosomal protein L24