IL_1VY7_258
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GCUAGG*CCAAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY7_258 not in the Motif Atlas
- Geometric match to IL_4V88_421
- Geometric discrepancy: 0.3893
- The information below is about IL_4V88_421
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared related
- Motif group
- IL_82488.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
1VY7|1|DA|G|875
1VY7|1|DA|C|876
1VY7|1|DA|U|877
1VY7|1|DA|A|878
1VY7|1|DA|G|879
1VY7|1|DA|G|880
*
1VY7|1|DA|C|897
1VY7|1|DA|C|898
1VY7|1|DA|A|899
1VY7|1|DA|A|900
1VY7|1|DA|A|901
1VY7|1|DA|C|902
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain DQ
- 50S ribosomal protein L16
- Chain DZ
- 50S ribosomal protein L25
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