IL_1VY7_308

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

1VY7|1|DA|G|2116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY7_308 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.417

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

1VY7|1|DA|G|2110
1VY7|1|DA|C|2111
1VY7|1|DA|G|2112
1VY7|1|DA|U|2113
1VY7|1|DA|A|2114
1VY7|1|DA|G|2115
1VY7|1|DA|G|2116
1VY7|1|DA|A|2117
1VY7|1|DA|U|2118
1VY7|1|DA|A|2119
1VY7|1|DA|G|2120
*
1VY7|1|DA|C|2178
1VY7|1|DA|C|2179

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains