IL_1VY7_327

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

1VY7|1|DA|U|2689, 1VY7|1|DA|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY7_327 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.0745

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

1VY7|1|DA|U|2687
1VY7|1|DA|U|2688
1VY7|1|DA|U|2689
1VY7|1|DA|C|2690
1VY7|1|DA|C|2691
*
1VY7|1|DA|G|2718
1VY7|1|DA|G|2719
1VY7|1|DA|U|2720
1VY7|1|DA|A|2721
1VY7|1|DA|G|2722

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DE

50S ribosomal protein L3

Chain DR

50S ribosomal protein L17

Chain DT

50S ribosomal protein L19