IL_1W2B_001
3D structure
- PDB id
- 1W2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Trigger Factor ribosome binding domain in complex with 50S
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGGAUU*AUGAAAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1W2B_001 not in the Motif Atlas
- Homologous match to IL_4V9F_001
- Geometric discrepancy: 0.0578
- The information below is about IL_4V9F_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
1W2B|1|0|G|21
1W2B|1|0|U|22
1W2B|1|0|G|23
1W2B|1|0|G|24
1W2B|1|0|A|25
1W2B|1|0|U|26
1W2B|1|0|U|27
*
1W2B|1|0|A|516
1W2B|1|0|U|517
1W2B|1|0|G|518
1W2B|1|0|A|519
1W2B|1|0|A|520
1W2B|1|0|A|521
1W2B|1|0|U|522
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain C
- 50S RIBOSOMAL PROTEIN L4P
- Chain Q
- 50S RIBOSOMAL PROTEIN L22P HMAL22, HL23, RIBOSOMAL PROTEIN L22
- Chain X
- 50S RIBOSOMAL PROTEIN L32E
Coloring options: