IL_1W2B_090

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGAC*GGAAAAGAG

Length

14 nucleotides

Bulged bases

1W2B|1|0|G|2815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1W2B_090 not in the Motif Atlas

Homologous match to IL_4V9F_091

Geometric discrepancy: 0.0843

The information below is about IL_4V9F_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

1W2B|1|0|C|2672
1W2B|1|0|U|2673
1W2B|1|0|G|2674
1W2B|1|0|A|2675
1W2B|1|0|C|2676
*
1W2B|1|0|G|2809
1W2B|1|0|G|2810
1W2B|1|0|A|2811
1W2B|1|0|A|2812
1W2B|1|0|A|2813
1W2B|1|0|A|2814
1W2B|1|0|G|2815
1W2B|1|0|A|2816
1W2B|1|0|G|2817

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3P

Chain I

50S RIBOSOMAL PROTEIN L13P