IL_1X8W_008

3D structure

PDB id

1X8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAC*GAGUACUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90231.1

Basepair signature

cWW-L-L-L-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

1X8W|1|A|G|313
1X8W|1|A|A|314
1X8W|1|A|C|315
*
1X8W|1|A|G|406
1X8W|1|A|A|407
1X8W|1|A|G|408
1X8W|1|A|U|409
1X8W|1|A|A|410
1X8W|1|A|C|411
1X8W|1|A|U|412
1X8W|1|A|C|413

Current chains

Chain A

Tetrahymena ribozyme RNA

Nearby chains