3D structure

PDB id
1X8W (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
AG*UAU
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1X8W_027 not in the Motif Atlas
Geometric match to IL_1U6B_010
Geometric discrepancy: 0.1588
The information below is about IL_1U6B_010
Detailed Annotation
Major groove intercalation
Broad Annotation
No text annotation
Motif group
IL_07039.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
16

Unit IDs

1X8W|1|C|A|226
1X8W|1|C|G|227
*
1X8W|1|C|U|247
1X8W|1|C|A|248
1X8W|1|C|U|249

Current chains

Chain C
Tetrahymena ribozyme RNA

Nearby chains

Chain B
Tetrahymena ribozyme RNA

Coloring options:


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