IL_1X8W_028

3D structure

PDB id

1X8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1X8W_028 not in the Motif Atlas

Geometric match to IL_1U6B_007

Geometric discrepancy: 0.1782

The information below is about IL_1U6B_007

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

1X8W|1|C|C|262
1X8W|1|C|A|263
1X8W|1|C|G|264
*
1X8W|1|C|C|311
1X8W|1|C|G|312

Current chains

Chain C

Tetrahymena ribozyme RNA

Nearby chains