IL_1XMO_050

3D structure

PDB id

1XMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XMO_050 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.0872

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1XMO|1|A|C|1303
1XMO|1|A|G|1304
1XMO|1|A|G|1305
1XMO|1|A|A|1306
1XMO|1|A|U|1307
1XMO|1|A|U|1308
*
1XMO|1|A|A|1329
1XMO|1|A|U|1330
1XMO|1|A|G|1331
1XMO|1|A|A|1332
1XMO|1|A|A|1333
1XMO|1|A|G|1334

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain S

30S ribosomal protein S19

Chain V

30S ribosomal protein Thx