IL_1XNQ_028

3D structure

PDB id

1XNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

1XNQ|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XNQ_028 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0805

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

1XNQ|1|A|G|662
1XNQ|1|A|A|663
1XNQ|1|A|G|664
1XNQ|1|A|A|665
1XNQ|1|A|G|666
*
1XNQ|1|A|U|740
1XNQ|1|A|G|741
1XNQ|1|A|G|742
1XNQ|1|A|U|743

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain F

Ribosomal protein S6

Chain O

Ribosomal protein S15

Chain R

Ribosomal protein S18