IL_1Y39_001

3D structure

PDB id

1Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-evolution of protein and RNA structures within a highly conserved ribosomal domain

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUAU*AAUC

Length

8 nucleotides

Bulged bases

1Y39|1|C|A|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y39_001 not in the Motif Atlas

Geometric match to IL_1MMS_001

Geometric discrepancy: 0.1945

The information below is about IL_1MMS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

1Y39|1|C|G|109
1Y39|1|C|U|110
1Y39|1|C|A|111
1Y39|1|C|U|112
*
1Y39|1|C|A|126
1Y39|1|C|A|127
1Y39|1|C|U|128
1Y39|1|C|C|129

Current chains

Chain C

58 Nucleotide Ribosomal 23S RNA Domain

Nearby chains

Chain A

50S ribosomal protein L11