IL_1Y39_003
3D structure
- PDB id
- 1Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-evolution of protein and RNA structures within a highly conserved ribosomal domain
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GUAU*AAUC
- Length
- 8 nucleotides
- Bulged bases
- 1Y39|1|D|A|311
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1Y39_003 not in the Motif Atlas
- Geometric match to IL_1MMS_001
- Geometric discrepancy: 0.1971
- The information below is about IL_1MMS_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_92446.2
- Basepair signature
- cWW-cWW-R-L-L
- Number of instances in this motif group
- 5
Unit IDs
1Y39|1|D|G|309
1Y39|1|D|U|310
1Y39|1|D|A|311
1Y39|1|D|U|312
*
1Y39|1|D|A|326
1Y39|1|D|A|327
1Y39|1|D|U|328
1Y39|1|D|C|329
Current chains
- Chain D
- 58 Nucleotide Ribosomal 23S RNA Domain
Nearby chains
- Chain A
- 50S ribosomal protein L11
- Chain B
- 50S ribosomal protein L11
- Chain C
- Large subunit ribosomal RNA; LSU rRNA
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