IL_1Y69_015

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

1Y69|1|0|G|814, 1Y69|1|0|G|818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_015 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.2074

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

1Y69|1|0|G|687
1Y69|1|0|A|688
1Y69|1|0|A|689
1Y69|1|0|A|690
1Y69|1|0|C|691
*
1Y69|1|0|G|812
1Y69|1|0|A|813
1Y69|1|0|G|814
1Y69|1|0|A|815
1Y69|1|0|U|816
1Y69|1|0|A|817
1Y69|1|0|G|818
1Y69|1|0|C|819

Current chains

Chain 0

23S ribosomal RNA

Nearby chains