IL_1Y69_054

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

UGGAG*CGUUGAAA

Length

13 nucleotides

Bulged bases

1Y69|1|0|U|1601, 1Y69|1|0|G|1602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_054 not in the Motif Atlas

Homologous match to IL_7A0S_050

Geometric discrepancy: 0.3212

The information below is about IL_7A0S_050

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_28245.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

1Y69|1|0|U|1426
1Y69|1|0|G|1427
1Y69|1|0|G|1428
1Y69|1|0|A|1429
1Y69|1|0|G|1430
*
1Y69|1|0|C|1598
1Y69|1|0|G|1599
1Y69|1|0|U|1600
1Y69|1|0|U|1601
1Y69|1|0|G|1602
1Y69|1|0|A|1603
1Y69|1|0|A|1604
1Y69|1|0|A|1605

Current chains

Chain 0

23S ribosomal RNA

Nearby chains