IL_1Y69_086

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

AUUC*GGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_086 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2298

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

1Y69|1|0|A|2079
1Y69|1|0|U|2080
1Y69|1|0|U|2081
1Y69|1|0|C|2082
*
1Y69|1|0|G|2173
1Y69|1|0|G|2174
1Y69|1|0|A|2175
1Y69|1|0|U|2176

Current chains

Chain 0

23S ribosomal RNA

Nearby chains