IL_1Y69_110

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

UCUCC*GGUAG

Length

10 nucleotides

Bulged bases

1Y69|1|0|U|2668, 1Y69|1|0|C|2669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_110 not in the Motif Atlas

Homologous match to IL_7A0S_096

Geometric discrepancy: 0.1532

The information below is about IL_7A0S_096

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

1Y69|1|0|U|2666
1Y69|1|0|C|2667
1Y69|1|0|U|2668
1Y69|1|0|C|2669
1Y69|1|0|C|2670
*
1Y69|1|0|G|2698
1Y69|1|0|G|2699
1Y69|1|0|U|2700
1Y69|1|0|A|2701
1Y69|1|0|G|2702

Current chains

Chain 0

23S ribosomal RNA

Nearby chains