IL_1Y69_130

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GAUGU*GCGC

Length

9 nucleotides

Bulged bases

1Y69|1|0|U|1044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_130 not in the Motif Atlas

Geometric match to IL_8C3A_438

Geometric discrepancy: 0.3347

The information below is about IL_8C3A_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

1Y69|1|0|G|1042
1Y69|1|0|A|1043
1Y69|1|0|U|1044
1Y69|1|0|G|1045
1Y69|1|0|U|1046
*
1Y69|1|0|G|1131
1Y69|1|0|C|1132
1Y69|1|0|G|1133
1Y69|1|0|C|1134

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16