IL_8C3A_438

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

8C3A|1|CM|G|861

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

8C3A|1|CM|C|859
8C3A|1|CM|G|860
8C3A|1|CM|G|861
8C3A|1|CM|G|862
8C3A|1|CM|G|863
*
8C3A|1|CM|C|935
8C3A|1|CM|A|936
8C3A|1|CM|A|937
8C3A|1|CM|G|938

Current chains

Chain CM

18S

Nearby chains

Chain CO

40S ribosomal protein S1

Chain DA

40S ribosomal protein S13

Chain DN

40S ribosomal protein S26