IL_1YIT_088

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGAC*GGAAAAGAG

Length

14 nucleotides

Bulged bases

1YIT|1|0|G|2815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YIT_088 not in the Motif Atlas

Geometric match to IL_5J7L_345

Geometric discrepancy: 0.2589

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

1YIT|1|0|C|2672
1YIT|1|0|U|2673
1YIT|1|0|G|2674
1YIT|1|0|A|2675
1YIT|1|0|C|2676
*
1YIT|1|0|G|2809
1YIT|1|0|G|2810
1YIT|1|0|A|2811
1YIT|1|0|A|2812
1YIT|1|0|A|2813
1YIT|1|0|A|2814
1YIT|1|0|G|2815
1YIT|1|0|A|2816
1YIT|1|0|G|2817

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3P

Chain J

50S RIBOSOMAL PROTEIN L13P