IL_1YJN_004
3D structure
- PDB id
- 1YJN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGGAG*CGAAGAAC
- Length
- 13 nucleotides
- Bulged bases
- 1YJN|1|0|A|96
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1YJN_004 not in the Motif Atlas
- Homologous match to IL_4V9F_004
- Geometric discrepancy: 0.0528
- The information below is about IL_4V9F_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_54465.1
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
1YJN|1|0|G|77
1YJN|1|0|G|78
1YJN|1|0|G|79
1YJN|1|0|A|80
1YJN|1|0|G|81
*
1YJN|1|0|C|93
1YJN|1|0|G|94
1YJN|1|0|A|95
1YJN|1|0|A|96
1YJN|1|0|G|97
1YJN|1|0|A|98
1YJN|1|0|A|99
1YJN|1|0|C|100
Current chains
- Chain 0
- 23S Ribosomal RNA
Nearby chains
- Chain T
- 50S ribosomal protein L24P
- Chain V
- 50S ribosomal protein L29P
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