IL_1YJN_012

3D structure

PDB id

1YJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJN_012 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.0545

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1YJN|1|0|C|290
1YJN|1|0|C|291
1YJN|1|0|G|292
1YJN|1|0|A|293
1YJN|1|0|C|294
1YJN|1|0|C|295
1YJN|1|0|G|296
*
1YJN|1|0|C|355
1YJN|1|0|C|356
1YJN|1|0|A|357
1YJN|1|0|G|358
1YJN|1|0|U|359
1YJN|1|0|A|360
1YJN|1|0|C|361
1YJN|1|0|G|362

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains