IL_1YJN_064

3D structure

PDB id

1YJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCAAAU*ACUCGUACG

Length

16 nucleotides

Bulged bases

1YJN|1|0|A|1857, 1YJN|1|0|C|1872, 1YJN|1|0|C|1876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJN_064 not in the Motif Atlas

Homologous match to IL_4V9F_065

Geometric discrepancy: 0.0358

The information below is about IL_4V9F_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

1YJN|1|0|C|1854
1YJN|1|0|G|1855
1YJN|1|0|C|1856
1YJN|1|0|A|1857
1YJN|1|0|A|1858
1YJN|1|0|A|1859
1YJN|1|0|U|1860
*
1YJN|1|0|A|1869
1YJN|1|0|C|1870
1YJN|1|0|U|1871
1YJN|1|0|C|1872
1YJN|1|0|G|1873
1YJN|1|0|U|1874
1YJN|1|0|A|1875
1YJN|1|0|C|1876
1YJN|1|0|G|1877

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae