IL_1YJN_088
3D structure
- PDB id
- 1YJN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUGAC*GGAAAAGAG
- Length
- 14 nucleotides
- Bulged bases
- 1YJN|1|0|G|2815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1YJN_088 not in the Motif Atlas
- Geometric match to IL_4WF9_099
- Geometric discrepancy: 0.2606
- The information below is about IL_4WF9_099
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
1YJN|1|0|C|2672
1YJN|1|0|U|2673
1YJN|1|0|G|2674
1YJN|1|0|A|2675
1YJN|1|0|C|2676
*
1YJN|1|0|G|2809
1YJN|1|0|G|2810
1YJN|1|0|A|2811
1YJN|1|0|A|2812
1YJN|1|0|A|2813
1YJN|1|0|A|2814
1YJN|1|0|G|2815
1YJN|1|0|A|2816
1YJN|1|0|G|2817
Current chains
- Chain 0
- 23S Ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain J
- 50S ribosomal protein L13P
Coloring options: