IL_1YJN_090

3D structure

PDB id

1YJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCACU*ACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJN_090 not in the Motif Atlas

Homologous match to IL_4V9F_093

Geometric discrepancy: 0.0689

The information below is about IL_4V9F_093

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

1YJN|1|0|C|2717
1YJN|1|0|C|2718
1YJN|1|0|A|2719
1YJN|1|0|C|2720
1YJN|1|0|U|2721
*
1YJN|1|0|A|2761
1YJN|1|0|C|2762
1YJN|1|0|G|2763

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P

Chain U

50S ribosomal protein L24E