IL_1YJW_040

3D structure

PDB id

1YJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Quinupristin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUAAGUG*CUCAAA

Length

13 nucleotides

Bulged bases

1YJW|1|0|C|1245, 1YJW|1|0|A|1247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJW_040 not in the Motif Atlas

Homologous match to IL_4V9F_040

Geometric discrepancy: 0.1254

The information below is about IL_4V9F_040

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

1YJW|1|0|U|1115
1YJW|1|0|U|1116
1YJW|1|0|A|1117
1YJW|1|0|A|1118
1YJW|1|0|G|1119
1YJW|1|0|U|1120
1YJW|1|0|G|1121
*
1YJW|1|0|C|1243
1YJW|1|0|U|1244
1YJW|1|0|C|1245
1YJW|1|0|A|1246
1YJW|1|0|A|1247
1YJW|1|0|A|1248

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L6P

Chain J

50S RIBOSOMAL PROTEIN L13P