IL_1YJW_054

3D structure

PDB id

1YJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Quinupristin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUCG*UCAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJW_054 not in the Motif Atlas

Homologous match to IL_4V9F_055

Geometric discrepancy: 0.0565

The information below is about IL_4V9F_055

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

1YJW|1|0|G|1542
1YJW|1|0|G|1543
1YJW|1|0|U|1544
1YJW|1|0|C|1545
1YJW|1|0|G|1546
*
1YJW|1|0|U|1639
1YJW|1|0|C|1640
1YJW|1|0|A|1641
1YJW|1|0|A|1642
1YJW|1|0|C|1643

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S RIBOSOMAL PROTEIN L19E