IL_1YJW_057

3D structure

PDB id

1YJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Quinupristin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGGAAG*CAGGAAG

Length

13 nucleotides

Bulged bases

1YJW|1|0|G|1604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJW_057 not in the Motif Atlas

Homologous match to IL_4V9F_058

Geometric discrepancy: 0.0611

The information below is about IL_4V9F_058

Detailed Annotation

Kink-turn

Broad Annotation

Kink-turn

Motif group

IL_32016.1

Basepair signature

cWW-tSH-tSH-tSS-tHS-L-R-cWW

Number of instances in this motif group

1

Unit IDs

1YJW|1|0|U|1587
1YJW|1|0|G|1588
1YJW|1|0|G|1589
1YJW|1|0|A|1590
1YJW|1|0|A|1591
1YJW|1|0|G|1592
*
1YJW|1|0|C|1602
1YJW|1|0|A|1603
1YJW|1|0|G|1604
1YJW|1|0|G|1605
1YJW|1|0|A|1606
1YJW|1|0|A|1607
1YJW|1|0|G|1608

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S RIBOSOMAL PROTEIN L19E

Chain Z

50S RIBOSOMAL PROTEIN L37AE