IL_1YJW_064

3D structure

PDB id

1YJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Quinupristin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGCAAAU*ACUCGUACG

Length

16 nucleotides

Bulged bases

1YJW|1|0|A|1857, 1YJW|1|0|C|1872, 1YJW|1|0|C|1876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJW_064 not in the Motif Atlas

Homologous match to IL_4V9F_065

Geometric discrepancy: 0.0332

The information below is about IL_4V9F_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

1YJW|1|0|C|1854
1YJW|1|0|G|1855
1YJW|1|0|C|1856
1YJW|1|0|A|1857
1YJW|1|0|A|1858
1YJW|1|0|A|1859
1YJW|1|0|U|1860
*
1YJW|1|0|A|1869
1YJW|1|0|C|1870
1YJW|1|0|U|1871
1YJW|1|0|C|1872
1YJW|1|0|G|1873
1YJW|1|0|U|1874
1YJW|1|0|A|1875
1YJW|1|0|C|1876
1YJW|1|0|G|1877

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2P

Chain Z

50S RIBOSOMAL PROTEIN L37AE