IL_1YJW_103
3D structure
- PDB id
- 1YJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of Quinupristin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGGAGUAC*GGAAAUC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1YJW_103 not in the Motif Atlas
- Geometric match to IL_7A0S_006
- Geometric discrepancy: 0.2078
- The information below is about IL_7A0S_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.1
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
1YJW|1|9|G|74
1YJW|1|9|G|75
1YJW|1|9|G|76
1YJW|1|9|A|77
1YJW|1|9|G|78
1YJW|1|9|U|79
1YJW|1|9|A|80
1YJW|1|9|C|81
*
1YJW|1|9|G|101
1YJW|1|9|G|102
1YJW|1|9|A|103
1YJW|1|9|A|104
1YJW|1|9|A|105
1YJW|1|9|U|106
1YJW|1|9|C|107
Current chains
- Chain 9
- 5S RIBOSOMAL RNA
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain H
- 50S RIBOSOMAL PROTEIN L10E
- Chain W
- 50S RIBOSOMAL PROTEIN L30P
Coloring options: