IL_1YNE_011

3D structure

PDB id

1YNE (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR structure of the apoB mRNA stem-loop and its interaction with the C to U editing APOBEC1 complementary factor

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UAU*AGUA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YNE_011 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.275

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

1YNE|11|A|U|6
1YNE|11|A|A|7
1YNE|11|A|U|8
*
1YNE|11|A|A|23
1YNE|11|A|G|24
1YNE|11|A|U|25
1YNE|11|A|A|26

Current chains

Chain A

APOLIPOPROTEIN B mRNA

Nearby chains