1YNE Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1YNE_001 | 1/A/11:20 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_1YNE_002 | 2/A/11:20 | No text annotation | geometric HL_2Y9H_003 HL_75660.9 | |
| HL_1YNE_003 | 3/A/11:20 | tRNA D-loop | geometric HL_3EPH_001 HL_45175.1 | |
| HL_1YNE_004 | 4/A/11:20 | No text annotation | ||
| HL_1YNE_005 | 5/A/11:20 | No text annotation | ||
| HL_1YNE_006 | 6/A/11:20 | No text annotation | ||
| HL_1YNE_007 | 7/A/11:20 | No text annotation | ||
| HL_1YNE_008 | 8/A/11:20 | No text annotation | ||
| HL_1YNE_009 | 9/A/11:20 | tRNA D-loop | geometric HL_2AZX_004 NA | |
| HL_1YNE_010 | 10/A/11:20 | tRNA D-loop | geometric HL_2AZX_004 NA | |
| HL_1YNE_011 | 11/A/11:20 | No text annotation | ||
| HL_1YNE_012 | 12/A/11:20 | No text annotation | ||
| HL_1YNE_013 | 13/A/11:20 | No text annotation | ||
| HL_1YNE_014 | 14/A/11:20 | No text annotation | ||
| HL_1YNE_015 | 15/A/11:20 | No text annotation | ||
| HL_1YNE_016 | 16/A/11:20 | No text annotation | geometric HL_6D12_002 HL_89167.3 | |
| HL_1YNE_017 | 17/A/11:20 | No text annotation | ||
| HL_1YNE_018 | 18/A/13:19 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_1YNE_019 | 19/A/11:20 | No text annotation | ||
| HL_1YNE_021 | 20/A/14:18 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1YNE_020 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1YNE_001 | 1/A/6:8, 1/A/23:26 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_1YNE_002 | 2/A/6:8, 2/A/23:26 | Major groove platform with extra cWW | geometric IL_4V9F_003 IL_36931.3 | |
| IL_1YNE_003 | 3/A/6:8, 3/A/23:26 | Major groove platform with extra cWW | geometric IL_4V88_397 NA | |
| IL_1YNE_022 | 4/A/7:8, 4/A/23:25 | Major groove platform | geometric IL_7A0S_073 IL_48076.9 | |
| IL_1YNE_005 | 5/A/6:8, 5/A/23:26 | Major groove platform with extra cWW | geometric IL_4V9F_003 IL_36931.3 | |
| IL_1YNE_006 | 6/A/6:8, 6/A/23:26 | Major groove platform with extra cWW | geometric IL_3PDR_004 IL_36931.3 | |
| IL_1YNE_007 | 7/A/6:8, 7/A/23:26 | Isolated non-canonical cWW pair | geometric IL_1U6B_001 IL_42997.6 | |
| IL_1YNE_023 | 8/A/7:8, 8/A/23:25 | Single stack bend | geometric IL_4C7O_002 IL_15011.4 | |
| IL_1YNE_009 | 9/A/6:8, 9/A/23:26 | Major groove platform with extra cWW | geometric IL_4V9F_003 IL_36931.3 | |
| IL_1YNE_010 | 10/A/6:8, 10/A/23:26 | Isolated non-canonical cWW with bulges | geometric IL_7ELQ_002 NA | |
| IL_1YNE_011 | 11/A/6:8, 11/A/23:26 | Isolated non-canonical cWW pair | geometric IL_1U6B_001 IL_42997.6 | |
| IL_1YNE_012 | 12/A/6:8, 12/A/23:26 | Major groove platform with extra cWW | geometric IL_4V88_397 NA | |
| IL_1YNE_013 | 13/A/6:8, 13/A/23:26 | Major groove platform with extra cWW | geometric IL_3PDR_004 IL_36931.3 | |
| IL_1YNE_014 | 14/A/6:8, 14/A/23:26 | Major groove platform with extra cWW | geometric IL_4V9F_003 IL_36931.3 | |
| IL_1YNE_015 | 15/A/6:8, 15/A/23:26 | Isolated non-canonical cWW with bulges | geometric IL_7ELQ_002 NA | |
| IL_1YNE_024 | 16/A/7:8, 16/A/23:25 | No text annotation | ||
| IL_1YNE_017 | 17/A/6:8, 17/A/23:26 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_1YNE_018 | 18/A/6:8, 18/A/23:26 | Major groove platform with extra cWW | geometric IL_4V9F_003 IL_36931.3 | |
| IL_1YNE_019 | 18/A/11:13, 18/A/19:20 | Single stack bend | geometric IL_4V83_236 IL_15011.4 | |
| IL_1YNE_025 | 19/A/7:8, 19/A/23:25 | Major groove platform | geometric IL_4OQU_002 IL_48076.9 | |
| IL_1YNE_021 | 20/A/6:8, 20/A/23:26 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_1YNE_026 | 20/A/11:14, 20/A/18:20 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1YNE_004 | Major groove platform with extra cWW | ||
| IL_1YNE_008 | Major groove platform with extra cWW | ||
| IL_1YNE_016 | Major groove platform with extra cWW | ||
| IL_1YNE_020 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
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