IL_1YVP_001
3D structure
- PDB id
- 1YVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ro autoantigen complexed with RNAs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.2 Å
Loop
- Sequence
- C(IU)GG*C(IU)AG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1YVP_001 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.1633
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.3
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 41
Unit IDs
1YVP|1|C|C|2
1YVP|1|C|IU|3
1YVP|1|C|G|4
1YVP|1|C|G|5
*
1YVP|1|D|C|5
1YVP|1|D|IU|6
1YVP|1|D|A|7
1YVP|1|D|G|8
Current chains
- Chain C
- Y RNA sequence, first strand
- Chain D
- Y RNA sequence, second strand
Nearby chains
- Chain A
- 60-kDa SS-A/Ro ribonucleoprotein
Coloring options: