IL_1Z43_003

3D structure

PDB id

1Z43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 7S.S SRP RNA of M. jannaschii

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCCAGGC*GAGCAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z43_003 not in the Motif Atlas

Geometric match to IL_3NDB_008

Geometric discrepancy: 0.169

The information below is about IL_3NDB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65851.3

Basepair signature

cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

Number of instances in this motif group

2

Unit IDs

1Z43|1|A|G|200
1Z43|1|A|C|201
1Z43|1|A|C|202
1Z43|1|A|A|203
1Z43|1|A|G|204
1Z43|1|A|G|205
1Z43|1|A|C|206
*
1Z43|1|A|G|215
1Z43|1|A|A|216
1Z43|1|A|G|217
1Z43|1|A|C|218
1Z43|1|A|A|219
1Z43|1|A|A|220
1Z43|1|A|C|221

Current chains

Chain A

RNA (101-MER)

Nearby chains