IL_3NDB_008

3D structure

PDB id

3NDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a signal sequence bound to the signal recognition particle

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCCAGGC*GAGCAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65851.3

Basepair signature

cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

Number of instances in this motif group

2

Unit IDs

3NDB|1|M|G|200
3NDB|1|M|C|201
3NDB|1|M|C|202
3NDB|1|M|A|203
3NDB|1|M|G|204
3NDB|1|M|G|205
3NDB|1|M|C|206
*
3NDB|1|M|G|215
3NDB|1|M|A|216
3NDB|1|M|G|217
3NDB|1|M|C|218
3NDB|1|M|A|219
3NDB|1|M|A|220
3NDB|1|M|C|221

Current chains

Chain M

SRP RNA

Nearby chains

Chain A

Signal recognition particle 19 kDa protein

Chain B

Signal recognition 54 kDa protein