IL_1Z58_010

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGGAACUG*CUCAGUACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_010 not in the Motif Atlas

Geometric match to IL_4WF9_008

Geometric discrepancy: 0.1745

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_93502.2

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1Z58|1|2|G|164
1Z58|1|2|G|165
1Z58|1|2|G|166
1Z58|1|2|A|167
1Z58|1|2|A|168
1Z58|1|2|C|169
1Z58|1|2|U|170
1Z58|1|2|G|171
*
1Z58|1|2|C|178
1Z58|1|2|U|179
1Z58|1|2|C|180
1Z58|1|2|A|181
1Z58|1|2|G|182
1Z58|1|2|U|183
1Z58|1|2|A|184
1Z58|1|2|C|185
1Z58|1|2|C|186

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains