IL_1Z58_012

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_012 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.1534

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

1Z58|1|2|G|215
1Z58|1|2|U|216
1Z58|1|2|U|217
1Z58|1|2|A|218
1Z58|1|2|G|219
1Z58|1|2|U|220
1Z58|1|2|A|221
1Z58|1|2|G|222
*
1Z58|1|2|C|230
1Z58|1|2|G|231
1Z58|1|2|A|232
1Z58|1|2|A|233
1Z58|1|2|C|234
1Z58|1|2|C|235
1Z58|1|2|C|236

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains