IL_1Z58_030

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

1Z58|1|2|A|879, 1Z58|1|2|A|922, 1Z58|1|2|A|923

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_030 not in the Motif Atlas

Homologous match to IL_5J7L_272

Geometric discrepancy: 0.4205

The information below is about IL_5J7L_272

Detailed Annotation

C-loop with bulged stacked A's

Broad Annotation

C-loop

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

1Z58|1|2|G|877
1Z58|1|2|C|878
1Z58|1|2|A|879
1Z58|1|2|C|880
1Z58|1|2|U|881
*
1Z58|1|2|A|921
1Z58|1|2|A|922
1Z58|1|2|A|923
1Z58|1|2|C|924

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains