IL_1Z58_054

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UGAGG*CGCAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_054 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.172

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

1Z58|1|2|U|1370
1Z58|1|2|G|1371
1Z58|1|2|A|1372
1Z58|1|2|G|1373
1Z58|1|2|G|1374
*
1Z58|1|2|C|1383
1Z58|1|2|G|1384
1Z58|1|2|C|1385
1Z58|1|2|A|1386
1Z58|1|2|G|1387

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains