IL_1Z58_073

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGCG*CGAUC

Length

9 nucleotides

Bulged bases

1Z58|1|2|A|1964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_073 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2989

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

1Z58|1|2|G|1760
1Z58|1|2|G|1761
1Z58|1|2|C|1762
1Z58|1|2|G|1763
*
1Z58|1|2|C|1962
1Z58|1|2|G|1963
1Z58|1|2|A|1964
1Z58|1|2|U|1965
1Z58|1|2|C|1966

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains