IL_1Z58_077

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UGC*GUGAA

Length

8 nucleotides

Bulged bases

1Z58|1|2|G|1882, 1Z58|1|2|A|1883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_077 not in the Motif Atlas

Geometric match to IL_5J7L_008

Geometric discrepancy: 0.3068

The information below is about IL_5J7L_008

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

1Z58|1|2|U|1833
1Z58|1|2|G|1834
1Z58|1|2|C|1835
*
1Z58|1|2|G|1880
1Z58|1|2|U|1881
1Z58|1|2|G|1882
1Z58|1|2|A|1883
1Z58|1|2|A|1884

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains