IL_1Z58_096

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUACC*GGGC

Length

9 nucleotides

Bulged bases

1Z58|1|2|A|2381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_096 not in the Motif Atlas

Geometric match to IL_7A0S_102

Geometric discrepancy: 0.372

The information below is about IL_7A0S_102

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform with intercalation

Motif group

IL_58502.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

1Z58|1|2|G|2379
1Z58|1|2|U|2380
1Z58|1|2|A|2381
1Z58|1|2|C|2382
1Z58|1|2|C|2383
*
1Z58|1|2|G|2392
1Z58|1|2|G|2393
1Z58|1|2|G|2394
1Z58|1|2|C|2395

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains