IL_1ZDK_001

3D structure

PDB id

1ZDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

ACAU*AUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: ACAU,AUGU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1ZDK_001 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2628

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

1ZDK|1|R|A|3||||P_1
1ZDK|1|R|C|4||||P_1
1ZDK|1|R|A|5||||P_1
1ZDK|1|R|U|6||||P_1
*
1ZDK|1|R|A|18||||P_1
1ZDK|1|R|U|19||||P_1
1ZDK|1|R|G|20||||P_1
1ZDK|1|R|U|21||||P_1

Current chains

Chain R

RNA (5'-R(P*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3')

Nearby chains

Chain A

PROTEIN (MS2 PROTEIN CAPSID)