IL_23WI_017
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 23WI|1|5|A|1127, 23WI|1|5|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_23WI_017 not in the Motif Atlas
- Geometric match to IL_8B0X_101
- Geometric discrepancy: 0.0541
- The information below is about IL_8B0X_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
23WI|1|5|G|1024
23WI|1|5|G|1025
23WI|1|5|G|1026
23WI|1|5|A|1027
23WI|1|5|A|1028
23WI|1|5|A|1029
23WI|1|5|C|1030
*
23WI|1|5|G|1124
23WI|1|5|G|1125
23WI|1|5|A|1126
23WI|1|5|A|1127
23WI|1|5|G|1128
23WI|1|5|A|1129
23WI|1|5|U|1130
23WI|1|5|G|1131
23WI|1|5|U|1132
23WI|1|5|A|1133
23WI|1|5|A|1134
23WI|1|5|C|1135
23WI|1|5|G|1136
23WI|1|5|G|1137
23WI|1|5|G|1138
23WI|1|5|G|1139
23WI|1|5|C|1140
Current chains
- Chain 5
- RNA (2014-MER)
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain D
- Large ribosomal subunit protein uL3
- Chain J
- 50S ribosomal protein L13
- Chain M
- 50S ribosomal protein L16
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