IL_23WI_025
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_23WI_025 not in the Motif Atlas
- Homologous match to IL_7A0S_045
- Geometric discrepancy: 0.1266
- The information below is about IL_7A0S_045
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.5
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
23WI|1|5|A|1262
23WI|1|5|U|1263
23WI|1|5|A|1264
23WI|1|5|A|1265
23WI|1|5|G|1266
23WI|1|5|U|1267
23WI|1|5|A|1268
23WI|1|5|A|1269
*
23WI|1|5|U|2011
23WI|1|5|G|2012
23WI|1|5|A|2013
23WI|1|5|A|2014
23WI|1|5|A|2015
23WI|1|5|U|2016
23WI|1|5|U|2017
Current chains
- Chain 5
- RNA (2014-MER)
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL32
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain E
- 50S ribosomal protein L4
- Chain S
- 50S ribosomal protein L22
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