IL_23WI_047

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

23WI|1|5|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_047 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.0805

The information below is about IL_8B0X_128

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

23WI|1|5|U|1712
23WI|1|5|A|1713
23WI|1|5|U|1714
23WI|1|5|G|1715
23WI|1|5|U|1716
23WI|1|5|A|1717
23WI|1|5|G|1718
*
23WI|1|5|U|1742
23WI|1|5|G|1743
23WI|1|5|A|1744
23WI|1|5|A|1745
23WI|1|5|A|1746

Current chains

Chain 5

RNA (2014-MER)

Nearby chains