IL_23WI_048

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_048 not in the Motif Atlas

Geometric match to IL_8B0X_129

Geometric discrepancy: 0.1545

The information below is about IL_8B0X_129

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70744.1

Basepair signature

cWW-tSH-tHS-L-R-cWW

Number of instances in this motif group

2

Unit IDs

23WI|1|5|U|1720
23WI|1|5|G|1721
23WI|1|5|A|1722
23WI|1|5|G|1723
23WI|1|5|G|1724
*
23WI|1|5|U|1736
23WI|1|5|G|1737
23WI|1|5|G|1738
23WI|1|5|A|1739
23WI|1|5|G|1740

Current chains

Chain 5

RNA (2014-MER)

Nearby chains