IL_23WI_050
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGCAAAC*GGACGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 23WI|1|5|A|1801, 23WI|1|5|C|1816, 23WI|1|5|U|1820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_23WI_050 not in the Motif Atlas
- Homologous match to IL_7A0S_065
- Geometric discrepancy: 0.1014
- The information below is about IL_7A0S_065
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.6
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
23WI|1|5|U|1798
23WI|1|5|G|1799
23WI|1|5|C|1800
23WI|1|5|A|1801
23WI|1|5|A|1802
23WI|1|5|A|1803
23WI|1|5|C|1804
*
23WI|1|5|G|1813
23WI|1|5|G|1814
23WI|1|5|A|1815
23WI|1|5|C|1816
23WI|1|5|G|1817
23WI|1|5|U|1818
23WI|1|5|A|1819
23WI|1|5|U|1820
23WI|1|5|A|1821
Current chains
- Chain 5
- RNA (2014-MER)
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: