IL_23WI_072

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

23WI|1|5|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_072 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.1588

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.4

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

25

Unit IDs

23WI|1|5|A|2459
23WI|1|5|U|2460
23WI|1|5|A|2461
*
23WI|1|5|U|2489
23WI|1|5|G|2490
23WI|1|5|U|2491
23WI|1|5|U|2492
23WI|1|5|U|2493

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain M

50S ribosomal protein L16