IL_23WI_079
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 23WI|1|5|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_23WI_079 not in the Motif Atlas
- Homologous match to IL_7A0S_093
- Geometric discrepancy: 0.121
- The information below is about IL_7A0S_093
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
23WI|1|5|C|2636
23WI|1|5|U|2637
23WI|1|5|G|2638
23WI|1|5|A|2639
23WI|1|5|G|2640
*
23WI|1|5|C|2774
23WI|1|5|G|2775
23WI|1|5|A|2776
23WI|1|5|G|2777
23WI|1|5|A|2778
23WI|1|5|U|2779
23WI|1|5|G|2780
23WI|1|5|A|2781
23WI|1|5|G|2782
Current chains
- Chain 5
- RNA (2014-MER)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain D
- Large ribosomal subunit protein uL3
- Chain J
- 50S ribosomal protein L13
Coloring options: